Data
Relevant datasets produced at DBMR
| Group | Data type | Species | Tissue | Experimental design | Samples | Public repo | Published | Comment |
|---|---|---|---|---|---|---|---|---|
RNAseq ATACseq ChIPseq PROcap |
human | Prostate cancer | SMARCA4 protac vs control, 24h, 48h | 3 reps per group | WCM1078 cell line | |||
| RNA-seq | human | Prostate cancer | E2Fs combinatorial KDs | 3 reps per group | NA | no | WCM154 cell line | |
scRNA scATAC |
mouse | Prostate cancer | Tracing cancer plasticity and differentiation | 13 | NA | no | ||
| Methylation | mouse | Prostate cancer | PTEN + RB1 KOs | 2 x 3 reps | NA |
no | MethylationEPIC 285K | |
| WES | human | Prostate cancer | Patient cohort landscape | 168 (51 patients) | TMAs from Insel | |||
Methylation |
human | Prostate cancer | Patient cohort landscape | 155 (43 patients) | TMAs from Insel; MethylationEPIC 850K | |||
u6atac IHC RNAseq |
human | Prostate cancer | Minor intron spliceosome in cancer | 49 | NA |
no |
TMAs from Insel; NanoString; matched tumor and TME regions |
|
| RNAseq | human | Prostate cancer | siU6atac vs control | 10 x 4rep |
NA |
no |
PacBio + Illumina | |
| RNAseq | human | Prostate cancer | Minor spliceosome snRNA expression in cancer | 13 cell lines; 3 patients |
NA | no |
total RNA |